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The Single Most Undervalued Fact of Linear Algebra
Multiple Nested Distributed Language Networks in the Human Brain
Geometric constraints and cognitive inputs jointly shape emergent brain dynamics and topology
The Cultural Evolution of Human Goals
But what is cross-entropy? | Compression is Intelligence Part 2
Simultaneous single-cell calcium imaging of neuronal population activity and brain-wide BOLD fMRI
The Conway Multiverse
Toward Reference-Grade neuron models
Imre Lakatos
Reinventing Entropy | Compression is Intelligence Part 1
I Solved Connect 4
Investigating the replicability of the social and behavioural sciences
Visualization and simulation of full-scale point-neuron circuits via the Neural Circuit Visualizer web platform
Linking neural manifolds to circuit structure in recurrent networks
Neuronal ensembles in cortical function and disease
Stories That Can't Be Told Linearly
The Modular Architecture of Intelligence
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Shape-conformal porous frameworks for full coverage of neural organoids and high-resolution electrophysiology
Algorithmic Idealism: What Should You Believe to Experience Next?
Democratizing Music Therapy: LLM-Based Automated EEG Analysis and Progress Tracking for Low-Cost Home Devices
On Brain as a Mathematical Manifold: Neural Manifolds, Sheaf Semantics, and Leibnizian Harmony
The evolving landscape of neuroscience
Stephen Wolfram: Computation at the Foundations of Everything - Physics and More
Is there a ubiquitous spectrolaminar motif of local field potential power across primate neocortex
Building compositional tasks with shared neural subspaces
Emergent Complexity
The Math That Reveals What Millions Can't See
Data-driven identification of biological systems using multi-scale analysis
Models in Science
A brain-wide map of neural activity during complex behaviour
Adventures in State Space
Virtual brain twins for stimulation in epilepsy
Your Brain Is 150,000 Mini-Brains
Naturalizing biological agency: constitutive and dynamical strategies
Is criticality a unified setpoint of brain function?
Thalamus and consciousness: a systematic review on thalamic nuclei associated with consciousness
BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models
The Brain's Learning Algorithm Isn't Backpropagation
Topological Neuroscience: Linking Circuits to Function
Explore the Connections of the Brain — MICrONS Neuroscience Data Insights
Foundation model of neural activity predicts response to new stimulus types
How Might a ‘Philosopher's Toolkit’ Help Advance Neuroscience? Let's Ask Some Neuroscientists
How AI Solves the Impossible Search Problem
Beyond Mechanism—Extending Our Concepts of Causation in Neuroscience
Something Strange Happens When You Trust Quantum Mechanics
Dynamic Markov Blanket Detection for Macroscopic Physics Discovery
I did not care for the Shrek 5 teaser.
Levels of analysis for thinking about agency
Brain's Hidden Learning Limits
Integrating multiscale mathematical modeling and multidimensional data reveals the effects of epigenetic instability on acquired drug resistance in cancer
Toward Principles of Brain Network Organization and Function
A Surprising Way Your Brain Is Wired
Capitalism Is Over: What's Next Is Worse
As One and Many: Relating Individual and Emergent Group-Level Generative Models in Active Inference
Non-Invasive Brain-Computer Interfaces: State of the Art and Trends
Discriminating neural ensemble patterns through dendritic computations in randomly connected feedforward networks
The Social Dimensions of Scientific Knowledge
A Universal Theory of Brain Function
How Your Brain Chooses What to Remember
The NeuroML ecosystem for standardized multi-scale modeling in neuroscience
A framework for neural organoids, assembloids and transplantation studies
Neural correlates of phonetic categorization under auditory (phoneme) and visual (grapheme) modalities
Modality-Specific and Amodal Language Processing by Single Neurons
A Straightforward Explanation of the Good Regulator Theorem
The Core Equation Of Neuroscience
Multiscale organization of neuronal activity unifies scale-dependent theories of brain function
Decoding the brain: From neural representations to mechanistic models
The expanding world of neuroscience
Examining modal and amodal language processing in proficient bilinguals: evidence from the modality-switch paradigm
Measuring the Functioning Human Brain
The Key Equation Behind Probability
Reach-dependent reorientation of rotational dynamics in motor cortex
Generative Model That Won 2024 Nobel Prize
Two sub-cultures of explanatory computational psychiatry
Naturalizing relevance realization: why agency and cognition are fundamentally not computational
De novo motor learning creates structure in neural activity that shapes adaptation
Cognitive Computational Neuroscience of Language: Using Computational Models to Investigate Language Processing in the Brain
Nonlinear manifolds underlie neural population activity during behaviour
Cross Talk opposing view: Marr's three levels of analysis are not useful as a framework for neuroscience
Cognitive Computational Neuroscience of Language: Using Computational Models to Investigate Language Processing in the Brain
Selection of experience for memory by hippocampal sharp wave ripples
I made maps that show time instead of space
Connectomic reconstruction of a cortical column
You Don't Understand How Language Works
Neural Manifold Capacity Captures Representation Geometry, Correlations, and Task-Efficiency Across Species and Behaviors
An Agent-Based Model to Reproduce the Boolean Logic Behaviour of Neuronal Self-Organised Communities through Pulse Delay Modulation and Generation of Logic Gates
A synergetic turn in cognitive neuroscience of brain diseases
Modular Phoneme Processing in Human Superior Temporal Gyrus
Causation in neuroscience: keeping mechanism meaningful
Information decomposition and the informational architecture of the brain
Computational Cognitive Neuroscience
How to Live
Nexus: A Brief History of Information Networks from the Stone Age to AI
Shocks, Crises, and False Alarms: How to Assess True Macroeconomic Risk
The Complex World: An Introduction to the Foundations of Complexity Science
Then I Am Myself the World: What Consciousness Is and How to Expand It
Modal and amodal cognition: an overarching principle in various domains of psychology
img2fmri: a python package for predicting group-level fMRI responses to visual stimuli using deep neural networks
Reconstructing computational system dynamics from neural data with recurrent neural networks
Cross-attractor modeling of resting-state functional connectivity in psychiatric disorders
Living on the edge: network neuroscience beyond nodes
Solving the Problem of Induction
Agent-Based Modeling in the Philosophy of Science
Action theory is not policy theory is not agent theory
Semantic cognition versus numerical cognition: a topographical perspective
The neural ingredients for a language of thought are available
Brain assembloid: a human model for neural circuits research
Do Place Cells Dream of Deceptive Moves in a Signaling Game?
How I Make Science Animations
Dynamical independence: Discovering emergent macroscopic processes in complex dynamical systems
The evolution of Big Data in neuroscience and neurology
Building Blocks of Memory in the Brain
The arcuate fasciculus: Combining structure and function into surgical considerations
Task-specific modulation of corticospinal neuron activity during motor learning in mice
A unifying perspective on neural manifolds and circuits for cognition
Neuroepigenetics in Philosophical Focus: A Critical Analysis of the Philosophy of Mechanisms
Brain Criticality - Optimizing Neural Computations
EPViz: A flexible and lightweight visualizer to facilitate predictive modeling for multi-channel EEG
On the Role of Theory and Modeling in Neuroscience
Computation and Neural Manifolds
Deep Dive: Exploring the Real-World Value of Open Source Intelligence
Designing Reconfigurable Intelligent Systems with Markov Blankets
In a Flight of Starlings: The Wonders of Complex Systems
Neural manifold analysis of brain circuit dynamics in health and disease
Attractor and integrator networks in the brain
Energy-efficient network activity from disparate circuit parameters
A critical evaluation of dynamical systems models of bipolar disorder
A nomenclature consensus for nervous system organoids and assembloids
Market Analysis of the EBRAINS Multilevel Human Brain Atlas
Colloquium: Multiscale modeling of brain network organization
Generative Models of Brain Dynamics
Spin glass systems as collective active inference
Theory of the Multiregional Neocortex: Large-Scale Neural Dynamics and Distributed Cognition
Hierarchical Reinforcement Learning, Sequential Behavior, and the Dorsal Frontostriatal System
EEG (Electroencephalogram) Explained
A New Look at the Spin Glass Problem from a Deep Learning Perspective
Social Interaction With an Anonymous Opponent Requires Increased Involvement of the Theory of Mind Neural System: An fMRI Study
Causal mapping of human brain function
Metastable dynamics of neural circuits and networks
Engineering Brain Organoids: Toward Mature Neural Circuitry with an Intact Cytoarchitecture
Introduction to Molecular and Cellular Cognition
So Simple a Beginning: How Four Physical Principles Shape Our Living World
The Annotated Hodgkin and Huxley: A Reader's Guide
The Etiology of Mental Disorders: Concise, Clear and Synoptical
The Evolution of Agency: Behavioral Organization from Lizards to Humans
Neuroscience needs evolution
Scaffolding layered control architectures through constraint closure: insights into brain evolution and development
Biofidelic dynamic compression of human cortical spheroids reproduces neurotrauma phenotypes
Place cells: How your brain creates maps of abstract spaces
Supporting Scientific Practice through Model-Based Inquiry: A Students’-Eye View of Grappling with Data, Uncertainty, and Community in a Laboratory Experience
The mouse cortico–basal ganglia–thalamic network
Studies in Ecological Rationality
Markov Blanket Discovery using Minimum Message Length
Impaired reach-to-grasp kinematics in parkinsonian patients relates to dopamine-dependent, subthalamic beta bursts
Causal emergence from effective information: Neither causal nor emergent?
Attractor cortical neurodynamics, schizophrenia, and depression
Parcels and particles: Markov blankets in the brain
Markov blankets in the brain
A Philosophical Understanding of Representation for Neuroscience
Basal Ganglia and Thalamic Contributions to Language Function: Insights from a Parallel Distributed Processing Perspective
Why and how the brain weights contributions from a mixture of experts
Principles of Neural Science
Simulation of spiking activities neuron models using the Euler method
Structured Validation Processes in Neural Network Simulations and Analysis
When We Cease to Understand the World
From Neurons to Cognition: Technologies for Precise Recording of Neural Activity Underlying Behavior
Autotelic Agents with Intrinsically Motivated Goal-Conditioned Reinforcement Learning: a Short Survey
Generalized Linear Models Intro
Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform
18: Recurrent Networks — Intro to Neural Computation
Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics
Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data
International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts
The Next 50 Years of Neuroscience
Dimensionality Reduction Intro
Linear Systems I (Intro Lecture)
Model Types Intro
Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences
Coarse Graining, Fixed Points, and Scaling in a Large Population of Neurons
The Philosophy of Neuroscience
Parameter estimation and identifiability in a neural population model for electro-cortical activity
Expectation-induced modulation of metastable activity underlies faster coding of sensory stimuli
NetPyNE, a tool for data-driven multiscale modeling of brain circuits
Ontology, Ontologies, and Science
A Framework for Intelligence and Cortical Function Based on Grid Cells in the Neocortex
The neural instantiation of a priority map
A structural connectivity convergence zone in the ventral and anterior temporal lobes: Data-driven evidence from structural imaging
Lecture 4: Cognitive Neuroscience Methods I
Network Neuroscience: Mapping and Modelling Complex Brain Networks
Poisoner in Chief: Sidney Gottlieb and the CIA Search for Mind Control
The Neuroscience of Sleep and Dreams
The population dynamics of a canonical cognitive circuit
Building Models of Brain Disorders with Three-Dimensional Organoids
Connecting Circuits for Supraspinal Control of Locomotion
Navigating Social Space
Neural Circuit Motifs in Valence Processing
Predictive Processing: A Canonical Cortical Computation
What Is a Cognitive Map? Organizing Knowledge for Flexible Behavior
Working Memory 2.0
Free-energy minimization in joint agent-environment systems: A niche construction perspective
The Successor Representation: Its Computational Logic and Neural Substrates
Biophysical Modeling of Large-Scale Brain Dynamics and Applications for Computational Psychiatry
On the nature and use of models in network neuroscience
The Markov blankets of life: autonomy, active inference and the free energy principle
An Introductory Course in Computational Neuroscience
Building Experiments in PsychoPy
Skin in the Game: Hidden Asymmetries in Daily Life
The Cells of the Brain: A Review Book
The Heart of the Brain: The Hypothalamus and Its Hormones
The Strange Order of Things: Life, Feeling, and the Making of Cultures
The Structure of Intuitive Abilities and Their Relationships with Intelligence and Openness to Experience
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction
Frontal cortex and the hierarchical control of behavior
Large-Scale Gradients in Human Cortical Organization
Network Neuroscience Theory of Human Intelligence
Big data and the industrialization of neuroscience: A safe roadmap for understanding the brain?
A Theory of How Columns in the Neocortex Enable Learning the Structure of the World
Dynamics of large-scale fMRI networks: Deconstruct brain activity to build better models of brain function
Intrinsically Motivated Goal Exploration Processes with Automatic Curriculum Learning
Causal Consistency of Structural Equation Models
Mesoscale Brain Explorer, a flexible Python-based image analysis and visualization tool
Dynamic models of large-scale brain activity
Network neuroscience
Neuroscience Needs Behavior: Correcting a Reductionist Bias
Coordinated pluralism as a means to facilitate integrative taxonomies of cognition
How to Take Smart Notes: One Simple Technique to Boost Writing, Learning and Thinking
The Neuroscience of Expertise
The Neuroscience of Intelligence
Rapid tuning shifts in human auditory cortex enhance speech intelligibility
Multi-scale brain networks
Worldwide initiatives to advance brain research
Natural speech reveals the semantic maps that tile human cerebral cortex
Navigating the Affordance Landscape: Feedback Control as a Process Model of Behavior and Cognition
Neural Basis of Language: An Overview of An Evolving Model
Cognitive Unconscious and Human Rationality
Multi-Level Cause-Effect Systems
The Confidence Game: Why We Fall for It . . . Every Time
The Selfish Gene
Who Rules the World?
Why Only Us: Language and Evolution
Neuroanatomy Made Ridiculously Simple
Weaving the fabric of science: Dynamic network models of science’s unfolding structure
Active Inference, homeostatic regulation and adaptive behavioural control
Identifying Shared Brain Networks in Individuals by Decoupling Functional and Anatomical Variability
The brain's conversation with itself: neural substrates of dialogic inner speech
Inner Speech: Development, Cognitive Functions, Phenomenology, and Neurobiology
Marr's Levels Revisited: Understanding How Brains Break
The Non-Redundant Contributions of Marr's Three Levels of Analysis for Explaining Information-Processing Mechanisms
Rational Use of Cognitive Resources: Levels of Analysis Between the Computational and the Algorithmic
Interactive Effects of Explicit Emergent Structure: A Major Challenge for Cognitive Computational Modeling
Thirty Years After Marr's Vision: Levels of Analysis in Cognitive Science
Marr's Attacks: On Reductionism and Vagueness
Beyond Single-Level Accounts: The Role of Cognitive Architectures in Cognitive Scientific Explanation
From the Neuron Doctrine to Neural Networks
Principles of Neurobiology
Spin-glass model predicts metastable brain states that diminish in anesthesia
Homeostatic reinforcement learning for integrating reward collection and physiological stability
Logic as Marr's Computational Level: Four Case Studies
A hierarchy of intrinsic timescales across primate cortex
Making big data open: data sharing in neuroimaging
Putting big data to good use in neuroscience
Decoupling function and anatomy in atlases of functional connectivity patterns: Language mapping in tumor patients
Dimensionality reduction for large-scale neural recordings
Orbitofrontal cortex as a cognitive map of task space
A class of dynamic frictional contact problems governed by a system of hemivariational inequalities in thermoviscoelasticity
A Practical Introduction to Security and Risk Management: From the Global to the Personal
Consciousness and the Brain: Deciphering How the Brain Codes Our Thoughts
Multiscale modelling: approaches and challenges
Neuronal Dynamics: From Single Neurons to Networks and Models of Cognition
Reverse inference is not a fallacy per se: Cognitive processes can be inferred from functional imaging data
The Body Keeps the Score: Brain, Mind, and Body in the Healing of Trauma
Resting-brain functional connectivity predicted by analytic measures of network communication
What is a Multiscale Problem in Molecular Dynamics?
The Visual Representation of 3D Object Orientation in Parietal Cortex
Quantifying causal emergence shows that macro can beat micro
Feature selection and prediction with a Markov blanket structure learning algorithm
Energy metabolism and glutamate-glutamine cycle in the brain: A stoichiometric modeling perspective
Does ‘crisis-induced intermittency’ explain bipolar disorder dynamics?
The Expected Value of Control: An Integrative Theory of Anterior Cingulate Cortex Function
Brain Regions That Represent Amodal Conceptual Knowledge
Basal ganglia lesions in children and adults
A cognitive neuroscience, dual-systems approach to the sorites paradox
Brain Theory From a Circuits and Systems Perspective: How Electrical Science Explains Neuro-Circuits, Neuro-Systems, and Qubits
Fundamental Neuroscience
The Libet experiment and its implications for conscious will
Complexity in a brain-inspired agent-based model
Neural population dynamics during reaching
Motor control is decision-making
Synapses and Memory Storage
Cerebellar Contributions to Reach Adaptation and Learning Sensory Consequences of Action
The Human Connectome Project: A data acquisition perspective
Antifragile: Things That Gain from Disorder
Discovering the Human Connectome
Making decisions through a distributed consensus
Neural Control Engineering: The Emerging Intersection Between Control Theory and Neuroscience
Phi: A Voyage from the Brain to the Soul
Tamed by a Bear: Coming Home to Nature-Spirit-Self
The Signal and the Noise: Why So Many Predictions Fail—but Some Don’t
Introduction to Spectrogram Analysis
Marc Pierson - Ecosystems For Supported Behavior Change: The Holy Grail?
Rich-Club Organization of the Human Connectome
The Explanatory Force of Dynamical and Mathematical Models in Neuroscience: A Mechanistic Perspective
Letting the Brain Speak for Itself
Network anatomy and in vivo physiology of visual cortical neurons
1. Introduction to Human Behavioral Biology
2. Behavioral Evolution
Human Behavioral Biology — Full Lecture Series
Incognito: The Secret Lives of the Brain
Stochastic Processes Driving Directional Evolution
The Contribution of Prefrontal Executive Processes to Creating a Sense of Self
The Wisdom of Insecurity: A Message for an Age of Anxiety
The Basics of Brain Development
Common and distinct neural substrates for the perception of speech rhythm and intonation
Intrinsically Motivated Reinforcement Learning: An Evolutionary Perspective
Saliency, switching, attention and control: a network model of insula function
Centenary of Brodmann's map — conception and fate
Computational Modeling Methods for Neuroscientists
Diversity and Complexity
Neuroanatomy through Clinical Cases
The Bed of Procrustes: Philosophical and Practical Aphorisms
Theory-based causal induction
Equivalent Dynamics from Disparate Synaptic Weights in a Prevalent Visual Circuit
Real Reduction in Real Neuroscience: Metascience, Not Philosophy of Science (and Certainly Not Metaphysics!)
The multiplicity of experimental protocols: a challenge to reductionist and non-reductionist models of the unity of neuroscience
Neuroinformatics: From Bioinformatics to Databasing the Brain
Data sharing for computational neuroscience
Rigging the Game: How Inequality Is Reproduced in Everyday Life
The Art of Strategy: A Game Theorist’s Guide to Success in Business and Life
The Two Fundamental Problems of the Theory of Knowledge
A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data
Top-down causation without top-down causes
Cortical abnormalities and language function in young patients with basal ganglia stroke
The local microscale problem in the multiscale modeling of strongly heterogeneous media: Effects of boundary conditions and cell size
Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting
I Am a Strange Loop
Rethinking Expertise
The Black Swan: The Impact of the Highly Improbable
The Hippocampus Book
When mechanistic models explain
Forward inference using functional neuroimaging: dissociations versus associations
Joint action: bodies and minds moving together
Brodmann's Localisation in the Cerebral Cortex
Can cognitive processes be inferred from neuroimaging data?
On Writing Well: The Classic Guide to Writing Nonfiction
The Evolution of Cooperation
Generative linguistics within the cognitive neuroscience of language
The basal ganglia and rule-governed language use: evidence from vascular and degenerative conditions
Fooled by Randomness: The Hidden Role of Chance in Life and in the Markets
On the Shortness of Life
Similar network activity from disparate circuit parameters
Games Prisoners Play: The Tragicomic Worlds of Polish Prison
Wider Than the Sky: The Phenomenal Gift of Consciousness
Algorithms for Large Scale Markov Blanket Discovery
Optimal feedback control as a theory of motor coordination
Agent-based modeling: Methods and techniques for simulating human systems
The integration of neurology, psychiatry, and neuroscience in the 21st century
All the Math You Missed (But Need to Know for Graduate School)
Meditations
The Logic of Scientific Discovery
Evolutionary Epistemology
Basic Writings of Kant
Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems
Thinking about Mechanisms
Harnessing Complexity: Organizational Implications of a Scientific Frontier
Steps to an Ecology of Mind
The Feeling of What Happens: Body and Emotion in the Making of Consciousness
The Meme Machine
Hyperreality and Global Culture
Phantoms in the Brain: Probing the Mysteries of the Human Mind
Archetypal Psychology: A Brief Account
Visual Explanations: Images and Quantities, Evidence and Narrative
Darwin's Dangerous Idea: Evolution and the Meanings of Life
The Mind, the Brain, and Complex Adaptive Systems
Descartes' Error: Emotion, Reason, and the Human Brain
Simulacra and Simulation
The Neurobiology of Neural Networks
Game Theory for Applied Economists
Prisoner's Dilemma: John von Neumann, Game Theory, and the Puzzle of the Bomb
Advancing Neuroscience in the Decade of the Brain
An Introduction to Evolutionary Ecology
Consciousness Explained
The Lopsided Ape: Evolution of the Generative Mind
The Myth of Sisyphus
Computational neuroscience
The Human Use of Human Beings: Cybernetics and Society
Granger and science as network of models
The Society of Mind
Spin-glass models of neural networks
Restructuring revisited: II. An information processing theory of restructuring and insight
Mechanisms of Intelligence: Ross Ashby's Writings on Cybernetics
A Philosophical Look at System Dynamics
The Limits of Organization
The Social Construction of Reality: A Treatise in the Sociology of Knowledge
Notes on the Synthesis of Form
Tao Te Ching
Asylums: Essays on the Social Situation of Mental Patients and Other Inmates
The Presentation of Self in Everyday Life
The Computer and the Brain
The Compleat Strategyst: Being a Primer on the Theory of Games of Strategy
The Mathematical Theory of Communication
A Logical Calculus of the Ideas Immanent in Nervous Activity
Modern Man in Search of a Soul
The Expression of the Emotions in Man and Animals
Bipolar disorder as a dual wrong attractor system: mania as euphoric basin, depression as collapsed basin, and the euthymic ground state between
BlueCelluLab: biologically detailed neural network experimentation API
illumination e necka 2011 elsevier
Introduction to Neurodata Without Borders (NWB) for Python Users I
Markov Blankets
multiscale modeling
Structure precedes computation